原著論文

・Terada C, Kawamoto S, Yamayoshi A, Yamamoto T*. Chemistry of Therapeutic Oligonucleotides That Drives Interactions with Biomolecules. Pharmaceutics 14(12): 2647 (2022) https://www.mdpi.com/1999-4923/14/12/2647 A02-1

・Yamaoki Y, Nagata T, Kondo K, Sakamoto T, Takami S, Katahira M. Shedding light on the base-pair opening dynamics of nucleic acids in living human cells. Nat. Commun. 13, Article number: 7143 (2022) DOI: 10.1038/s41467-022-34822-4 A01

・Eladl OS, Yamaoki Y, Kondo K, Nagata T, Katahira M. Detection of interaction between an RNA aptamer and its target compound in living human cells using 2D in-cell NMR. Chemical Communications, DOI: 10.1039/D2CC05576G A01

・Shirane M, Yawata N, Motooka D, Shibata K, Khor SS, Omae Y, Kaburaki T, Yanai R, Mashimo H, Yamana S, Ito T, Hayashida A, Mori Y, Numata A, Murakami Y, Fujiwara K, Ohguro N, Hosogai M, Akiyama M, Hasegawa E, Paley M, Takeda A, Maenaka K, Akashi K, Yokoyama WM, Tokunaga K, Yawata M, Sonoda KH. Intraocular human cytomegaloviruses of ocular diseases are distinct from those of viremia and are capable of escaping from innate and adaptive immunity by exploiting HLA-E-mediated peripheral and central tolerance. Front Immunol. 13:1008220. (2022) doi: 10.3389/fimmu.2022.1008220. A01-2

・Saito A, Tamura T, Zahradnik J, Deguchi S, Tabata K, Anraku Y, Kimura I, Ito J, Yamasoba D, Nasser H, Toyoda M, Nagata K, Uriu K, Kosugi Y, Fujita S, Shofa M, Monira Begum M, Shimizu R, Oda Y, Suzuki R, Ito H, Nao N, Wang L, Tsuda M, Yoshimatsu K, Kuramochi J, Kita S, Sasaki-Tabata K, Fukuhara H, Maenaka K, Yamamoto Y, Nagamoto T, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Ueno T, Schreiber G, Takaori-Kondo A; Genotype to Phenotype Japan (G2P-Japan) Consortium, Shirakawa K, Sawa H, Irie T, Hashiguchi T, Takayama K, Matsuno K, Tanaka S, Ikeda T, Fukuhara T, Sato K. Virological characteristics of the SARS-CoV-2 Omicron BA.2.75 variant. Cell Host Microbe. 30(11):1540-1555.e15. (2022) doi: 10.1016/j.chom.2022.10.003. A01-2

・D. Palai, H. Tahara, S. Chikami, G. V. Latag, S. Maeda, C. Komura, H. Kurioka, T. Hayashi, Prediction of Serum Adsorption onto Polymer Brush Films by Machine Learning. ACS Biomater Sci Eng 2022. https://doi.org/10.1021/acsbiomaterials.2c00441 A01

・S. Seong, H. Kang, S. Han, Y. J. Son, J. Jang, H. J. Yoon, S. Maeda, S. Song, D. Palai, T. Hayashi, J. Noh, Surface Structure and Work Function Change of Pentafluorobenzeneselenolate Self-Assembled Monolayers on Au (111). Surfaces and Interfaces 33 (102228), 102228 (2022) https://www.sciencedirect.com/science/article/pii/S2468023022004941 A01

・S. Song, G. V. Latag, E. A. Q. Mondarte, R. Chang, T. Hayashi, Experimental Characterization of Water Condensation Processes on Self-Assembled Monolayers Using a Quartz Crystal Microbalance with Energy Dissipation Monitoring. Micro 2 (3), 513–523 (2022) https://www.mdpi.com/2673-8023/2/3/33 A01

・K. Nakane, H. Nagasawa, C. Fujimura, E. Koyanagi, S. Tomoshige, M. Ishikawa, S Sato, Switching of Photocatalytic Tyrosine/Histidine Labeling and Application to Photocatalytic Proximity Labeling. Int. J. Mol. Sci. 23(19), 11622 (2022) https://www.mdpi.com/1422-0067/23/19/11622 A02

・T. Hosokawa, S. Tanaka, T. Mori, Y. Baba, and Y. Katayama, Quiescent B cells acquire sensitivity to cell cycle arresting agents by B cell receptor stimulation. Biol. Pharm. Bull. 45, 847–850 (2022) https://doi.org/10.1248/bpb.b22-00176 A03

・Heo Y, Ishimoto N, Jeon YE, Yun JH, Ohki M, Anraku Y, Sasaki M, Kita S, Fukuhara H, Ikuta T, Kawakami K, Inoue A, Maenaka K, Tame JRH, Lee W, Park SY. Structure of the human galanin receptor 2 bound to galanin and Gq reveals the basis of ligand specificity and how binding affects the G-protein interface. PLoS Biol. 20(8): e3001714 (2022) doi: 10.1371/journal.pbio.3001714. A01-2

・Y. Mikame, Y. Sakai, R. Tahara, K. Doi, T. Yamamoto, C. Dohno, T. Shibata, A. Yamayoshi, Synthesis and Evaluation of Oligonucleotide-Containing-2’-O-{[(4,5’,8-trimethylpsoralen)-4’-ylmethoxy]ethylaminocarb-onyl}adenosine as Photo-crosslinkable Gene Targeting Tools. Chem. Pharm. Bull, Advance online publication, https://doi.org/10.1248/cpb.c22-00333 A02-1

・H. Hashimura, Y. V. Morimoto*, Y. Hirayama, M. Ueda, Calcium responses to external mechanical stimuli in the multicellular stage of Dictyostelium discoideum. Sci. Rep. 12, Article number: 12428 (2022) https://www.nature.com/articles/s41598-022-16774-3 A01

・A. Debas, K. Matsumura*, R. Rajan*, Polyethylene-glycol-modified zwitterionic polymer assisted protein aggregation arrest and refolding. Mol. Syst. Des. Eng., in press, DOI: 10.1039/D2ME00084A A03

・D. Hu, S.Fumoto, H. Miyamoto, M. Tanaka, K. Nishida, Flavonoids Enhance Lipofection Efficiency and Ameliorate Cytotoxicity in Colon26 and HepG2 Cells via Oxidative Stress Regulation. Pharmaceutics 14, 1203 (2022)
https://doi.org/10.3390/pharmaceutics14061203 A02
*掲載誌は、山吉 A02-1 と荏原 A03-2 がゲストエディターを務める特別号です。 https://www.mdpi.com/journal/pharmaceutics/special_issues/symbiotic_materials

・Y. Uchihara, T. B. M. Permata, H. Sato, R. K. Iwakawa, S. Katada, W. Gu, S. Kakoti, M. Yamauchi, R. Kato, S. Gondhowiardjo, N. Hosen, T. Yasuhara, A. Shibata*, DNA damage promotes HLA class I presentation by stimulating a pioneer round of translation-associated antigen production. Mol. Cell, in press https://doi.org/10.1016/j.molcel.2022.04.030 A02

・K. M. Tse, A. Vandenbon, X. Cui, T. Mino, T. Uehata, K. Yasuda, A. Sato, T. Tsujimura, F. Hia, M. Yoshinaga, M. Kinoshita, T. Okuno, O. Takeuchi, Enhancement of Regnase-1 expression with stem loop–targeting antisense oligonucleotides alleviates inflammatory diseases. Sci. Transl. Med.14, eabo2137 (2022) https://www.science.org/doi/10.1126/scitranslmed.abo2137 A02-1

・S.Fujii, S.Kozuka, K.Yokota, K.Ishihara, S. Yusa*, Preparation of Biocompatible Poly(2-(methacryloyloxy)ethyl phosphorylcholine) Hollow Particles Using Silica Particles as a Template. Langmuir 38, 5812–581 (2022) 10.1021/acs.langmuir.2c00423
Supplementary Journal Coverに選ばれています。 https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/langd5/2022/langd5.2022.38.issue-18/langd5.2022.38.issue-18/20220510/langd5.2022.38.issue-18.largecover-4.jpg A03

・K. Kitano, K. Ishihara, S. Yusa*, Formation of Water-Soluble Complexes from Fullerene with Biocompatible Block Copolymers Bearing Pendant Glucose and Phosphorylcholine. Langmuir 38, 5744–5751 (2022) 10.1021/acs.langmuir.2c00354
Supplementary Journal Coverに選ばれています。https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/langd5/20[…].38.issue-18/20220510/langd5.2022.38.issue-18.largecover-3.jpg A03

・Y. Fujioka, S. Kashiwagi, A. Yoshida, A. O. Satoh, M. Fujioka, M. Amano, Y. Yamauchi, Y. Ohba, A method for the generation of pseudovirus particles bearing SARS coronavirus spike protein in high yields. Cell Struct. Funct., in press. https://doi.org/10.1247/csf.21047 A01-1

・A. Tsuzuki, Y. Fujioka, A. Yoshida, S. Kashiwagi, M. Amano, T. Hira, A. Nakamura, H. Miyoshi, T. Atsumi, Y. Ohba, Direct visualization of glucagon-like peptide-1 secretion by fluorescent fusion proteins. J. Diab. Invest., in press. https://doi.org/10.1111/jdi.13800 A01-1

・Y. Mizoue, E. Onodera, K. Haraguchi, S. Yusa*, Association Behavior of Amphiphilic ABA Triblock Copolymer Composed of Poly(2-methoxyethyl acrylate) (A) and Poly(ethylene oxide) (B) in Aqueous Solution. Polymers, 14, 1678 (2022) https://doi.org/10.3390/polym14091678 A03

・T. T. Pham, T. D. Pham, S. Yusa*, pH- and Thermo-Responsive Water-Soluble Smart Polyion Complex (PIC) Vesicle with Polyampholyte Shells. Polymers, 14, 1656 (2022) https://doi.org/10.3390/polym14091659 A03

・J. Xu, N. Koizumi, Y. V. Morimoto, R. Ozuru, T. Masuzawa, S. Nakamura, Light dependent synthesis of a nucleotide second messenger controls the motility of a spirochete bacterium. Sci. Rep. 12, 6825 (2022) https://www.nature.com/articles/s41598-022-10556-7 A01

・S. Maeda, S. Chikam, G. V. Latag, S. Song, N. Iwakiri, T. Hayashi*, Analysis of Vicinal Water in Soft Contact Lenses Using a Combination of Infrared Absorption Spectroscopy and Multivariate Curve Resolution. Molecules 27, 2130 (2022) https://www.mdpi.com/1420-3049/27/7/2130 A01

・D. Zhao, R. Rajan, S. Yusa, M. Nakada, K. Matsumura, Development and structural analysis of dual-thermo-responsive self-assembled zwitterionic micelles. Materials Advances (2022) https://doi.org/10.1039/D1MA01189H A03

・M. M. Sobeh & A. Kitao*, Dissociation Pathways of the p53 DNA Binding Domain from DNA and Critical Roles of Key Residues Elucidated by dPaCS-MD/MSM. J. Chem. Inf. Model. 62, 1294–1307 (2022) https://pubs.acs.org/doi/10.1021/acs.jcim.1c01508 A01

・R.Tsuji, S.Ogata, S.Mochizuki*, Interaction between CD44 and Highly Condensed Hyaluronic Acid through Crosslinking with Proteins.
Bioorg. Chem., 121, 105666 (2022) https://doi.org/10.1016/j.bioorg.2022.105666 A01-2

・D. P. Tran, Y. Taira, T. Ogawa, R. Misu, Y. Miyazawa & A. Kitao*, Inhibition of the hexamerization of SARS-CoV-2 endoribonuclease and modeling of RNA structures bound to the hexamer. Scientific Reports 12, Article number: 3860 (2022) https://www.nature.com/articles/s41598-022-07792-2 A01

・A. Kojima, J. Nakao, N. Shimada, N. Yoshida, Y. Abe, Y. Mikame, T. Yamamoto, T. Wada, A. Maruyama*, A. Yamayoshi*, Selective Photo-Crosslinking Detection of Methylated Cytosine in DNA Duplex Aided by a Cationic Comb-Type Copolymer. ACS Biomaterials Science & Engineering, in press. https://pubs.acs.org/doi/full/10.1021/acsbiomaterials.2c00048
掲載号の表紙に選ばれています。https://pubs.acs.org/toc/abseba/8/5 A02

・K. Nakane, T. Niwa, M. Tsushima, S. Tomoshige, H. Taguchi, H. Nakamura, M. Ishikawa, S. Sato*, BODIPY Catalyzes Proximity-Dependent Histidine Labelling. ChemCatChem in press. https://chemistry-europe.onlinelibrary.wiley.com/doi/10.1002/cctc.202200077 A02

・K. Kitano, K. Ishihara, S. Yusa*, Preparation of a thermo-responsive drug carrier consisting of a biocompatible triblock copolymer and fullerene. J. Mater. Chem. B in press. https://doi.org/10.1039/D1TB02183D A03

・T. L. Nguyen, K. Ishinara, S. Yusa*, Separated Micelles Formation of pH-Resposive Random and Block Copolymers Containing Phosphorylcholine Groups. Polymers 14, 577 (2022). https://doi.org/10.3390/polym14030577 A03

・Nakagawa Y, Lee J, Liu Y, Abbasi S, Hong T, Cabral H, Uchida S, and Ebara M*. Microglial Immunoregulation by Apoptotic Cellular Membrane Mimetic Polymeric Particles. ACS Macro Lett. 11, 270–275 (2022) https://pubs.acs.org/doi/10.1021/acsmacrolett.1c00643 A03

・Kamitori K, Shirota M, Fujiwara Y. Structural basis of the selective sugar transport in sodium-glucose cotransporters. J. Mol. Biol., in press. https://pubmed.ncbi.nlm.nih.gov/35077764/ A02

・Mondarte E.A.Q, Zamarripa E.M.M, Chang R, Wang F, Song S, Tahara H, Hayashi T*. Interphase protein layer formed on self-assembled monolayers in crowded biological environments: analysis by surface force and quartz crystal microbalance measurements. Langmuir https://pubs.acs.org/doi/abs/10.1021/acs.langmuir.1c02312 A01

・Shimosaraya N, Sotani T, Miyagi Y, Mondarte E.A.Q, Suthiwanich K, Hayashi T, Nagata Y, Sogawa H, Sanda F. Tyrosine-based photoluminescent diketopiperazine supramolecular aggregates. Soft Matter 18 (1), 137-145 (2021) 10.1039/d1sm01206a: 10.1039/d1sm01206a A01

・Mahmoud Mostafa, M., Elsadek, N.E., Emam, S.E., Ando, H., Shimizu, T., Abdelkader, H., Ishima, Y., Farghaly Aly, U., Sarhan, H.A., Ishida, T., Using Bio-Layer Interferometry to evaluate anti-PEG antibody-mediated complement activation. Biol. Pharm. Bull., 45, 129-135 (2022) doi:10.1248/bpb.b21-00772 A02-1

・T. L. Nguyen, M. Mukai, D. Ihara, A. Takahara, S. Yusa*. Association Behavior of a Homopolymer Containing Choline Phosphonate Groups in Aqueous Solutions. Chem. Lett., 51, 103-106 (2022). https://doi.org/10.1246/cl.210601 A03

・S Yusa*, D Oka, Y Iwasaki, K Ishihara. pH-Responsive Association Behavior of Biocompatible Random Copolymers Containing Pendent Phosphorylcholine and Fatty Acid. Langmuir, 38, 5119–5127 (2022) https://pubs.acs.org/doi/10.1021/acs.langmuir.1c02200
Supplementary Journal Cover A03

・Yumoto K, Arisaka T, Okada K, Aoki K, Ose T, Masatani T, Sugiyama M, Ito N, Fukuhara H, Maenaka K.
Characterization of Single-Chain Fv Fragments of Neutralizing Antibodies to Rabies Virus Glycoprotein. Viruses 13(11): 2311 (2021) doi: 10.3390/v13112311. https://www.mdpi.com/1999-4915/13/11/2311 A01-2

・Li S, Yakabe K, Zai K, Liu Y, Kishimura A, Hase K, Kim Y-G*, Mori, T*, Katayama Y*. Specific adsorption of a β-lactam antibiotic in vivo by an anion-exchange resin for protection of the intestinal microbiota. Biomater. Sci., in press. A03-1

・Yamayoshi A*, Fukumoto H, Hayashi R, Kishimoto K, Kobori A, Koyanagi Y, Komano JA, Murakami A. Development of 7SK snRNA mimics that inhibit HIV transcription. ChemMedChem, 10.1002/cmdc.202100422 (2021). http://dx.doi.org/10.1002/cmdc.202100422 A02-1

・Yamamoto T*, Mukai Y, Wada F, Terada C, Kayaba Y, Oh K, Yamayoshi A, Obika S, Harada–Shiba M. Highly Potent GalNAc-Conjugated Tiny LNA Anti-miRNA-122 Antisense Oligonucleotides. Pharmaceutics, 13(6):817 (2021). https://doi.org/10.3390/pharmaceutics13060817 A02-1

・J. Li, Y. Mu, Y. Liu, A. Kishimura, T. Mori*, Y. Katayama*, Effect of size and loading of retinoic acid in polyvinyl butyrate nanoparticles on amelioration of colitis, polymers, 13:1472 (2021). A03-1

・A. Nakamura, S. Kurihara, D. Takahashi, Y. Nakamura, S. Kimura, W. Ohashi, M. Onuki, A. Kume, Y. Furusa, Y. Obata, S. Fukuda, Y. Sasazawa, S. Saiki, M. Matsumoto*, K. Hase*, Symbiotic polyamine metabolism regulates epithelial proliferation and macrophage differentiation in the colon, Nature Communications, DOI: 10.1038/s41467-021-22212-1, A03-1

・Y. Mu, Y. Kinashi, J. Li, T. Yoshikawa, A. Kishimura, M. Tanaka, T. Matsui, T. Mori*, K. Hase*, Y. Katayama*, Polyvinyl butyrate nanoparticles as butyrate donors for colitis treatment, ACS Applied Bio Materials, ACS Applied Bio Mater., 4, 2335-2341 (2021). A03-1

・Y. Mu, Y. Kinashi, A. Kishimura, T. Mori*, K. Hase*, Y. Katayama*, Effect of polyvinyl butyrate nanoparticles incorporated with immune suppressing vitamins on alteration of population of intestinal immune cells, Prog. Nat. Sci. Mater. Int., 30, 707-710 (2020). A03-1